Basic Information
Locus ID:
gene-LOC107021116
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
mitotic sister chromatid cohesion
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 52677820 | 52689457 | - | gene-LOC107021116 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.69 | 89,303.97 Da | 46.09 | 74.58 | -0.72 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04508 | TUDOR | 634 | 680 | 0.00426558 | IPR002999 |
| SUPERFAMILY | SSF63748 | Tudor/PWWP/MBT | 705 | 746 | 6.09E-7 | - |
| SUPERFAMILY | SSF63748 | Tudor/PWWP/MBT | 631 | 670 | 7.52E-8 | - |
| SUPERFAMILY | SSF63748 | Tudor/PWWP/MBT | 557 | 597 | 2.78E-6 | - |
| Gene3D | G3DSA:2.30.30.140 | - | 630 | 678 | 4.4E-11 | - |
| Gene3D | G3DSA:2.30.30.140 | - | 554 | 606 | 6.3E-11 | - |
| Gene3D | G3DSA:2.30.30.140 | - | 702 | 754 | 8.8E-11 | - |
| SMART | SM00333 | TUDOR_7 | 703 | 761 | 2.5 | IPR002999 |
| SMART | SM00333 | TUDOR_7 | 629 | 688 | 0.079 | IPR002999 |
| SMART | SM00333 | TUDOR_7 | 555 | 613 | 0.0041 | IPR002999 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 462 | 514 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 533 | 553 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 456 | 515 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 379 | 409 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80810.5 | - | 0 |
| RefSeq | XP_015077198.1 | uncharacterized protein LOC107021116 isoform X1 [Solanum pennellii] | 0 |
| A8MRD9 | Sister chromatid cohesion protein PDS5 homolog D OS=Arabidopsis thaliana OX=3702 GN=PDS5D PE=2 SV=3 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology