Basic Information
Locus ID:
gene-LOC107020971
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
MYND finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 11434838 | 11436607 | - | gene-LOC107020971 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.93 | 41,924.16 Da | 50.23 | 70.83 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01753 | MYND finger | 315 | 355 | 9.2E-8 | IPR002893 |
| SUPERFAMILY | SSF81901 | HCP-like | 112 | 233 | 5.1E-14 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 47 | 107 | 6.05E-6 | IPR036047 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 310 | 360 | 2.44E-10 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 305 | 359 | 1.0E-10 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 94 | 252 | 3.3E-19 | IPR011990 |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 313 | 355 | 11.066857 | IPR002893 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 362 | 386 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G67340.1 | HCP-like superfamily protein with MYND-type zinc finger. | 0 |
| RefSeq | XP_015077014.1 | F-box protein At1g67340 [Solanum pennellii] | 0 |
| Q9FYF9 | F-box protein At1g67340 OS=Arabidopsis thaliana OX=3702 GN=At1g67340 PE=1 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology