Basic Information
Locus ID:
gene-LOC107020824
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
XH domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 76333528 | 76343549 | - | gene-LOC107020824 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.43 | 133,046.73 Da | 38.43 | 72.26 | -0.75 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12266 | RRM_like_XS | 666 | 772 | 1.70613E-39 | IPR005380 |
| Pfam | PF03470 | XS zinc finger domain | 512 | 555 | 4.6E-16 | IPR005381 |
| Pfam | PF03470 | XS zinc finger domain | 120 | 163 | 8.7E-16 | IPR005381 |
| Pfam | PF03470 | XS zinc finger domain | 198 | 241 | 1.2E-15 | IPR005381 |
| Pfam | PF03469 | XH domain | 1048 | 1175 | 2.2E-51 | IPR005379 |
| Pfam | PF03470 | XS zinc finger domain | 274 | 317 | 3.7E-10 | IPR005381 |
| Pfam | PF03470 | XS zinc finger domain | 426 | 468 | 4.4E-11 | IPR005381 |
| Pfam | PF03468 | XS domain | 664 | 773 | 8.0E-37 | IPR005380 |
| Pfam | PF03470 | XS zinc finger domain | 43 | 84 | 7.3E-14 | IPR005381 |
| Pfam | PF03470 | XS zinc finger domain | 356 | 393 | 5.5E-8 | IPR005381 |
| Gene3D | G3DSA:3.30.70.2890 | XS domain | 659 | 828 | 3.5E-55 | IPR038588 |
| Coils | Coil | Coil | 926 | 981 | - | - |
| Coils | Coil | Coil | 987 | 1042 | - | - |
| Coils | Coil | Coil | 870 | 913 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G48670.1 | XH/XS domain-containing protein. Encodes IDN2 (INVOLVED IN DE NOVO 2), a double-stranded RNA-binding protein involved in de novo methylation and small interfering RNA (siRNA)-mediated maintenance methylation. IND2 is a component of the RNA-directed DNA methylation pathway. | 0 |
| RefSeq | XP_015076820.1 | protein INVOLVED IN DE NOVO 2-like [Solanum pennellii] | 0 |
| Q8VZ79 | Protein INVOLVED IN DE NOVO 2 OS=Arabidopsis thaliana OX=3702 GN=IDN2 PE=1 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Solanaceae | Lycium barbarum | 1 | gene-LOC132640208 |
| Solanaceae | Solanum chilense | 1 | SOLCI005203700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107020824 |