Basic Information
Locus ID:
gene-LOC107020823
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
ABC transporter
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 8849049 | 8855107 | + | gene-LOC107020823 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.42 | 162,112.94 Da | 36.49 | 108.61 | 0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 876 | 1166 | 5.77668E-73 | IPR044726 |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 263 | 550 | 4.12734E-91 | IPR044746 |
| CDD | cd03244 | ABCC_MRP_domain2 | 1189 | 1409 | 1.08098E-122 | - |
| CDD | cd03250 | ABCC_MRP_domain1 | 575 | 778 | 1.6309E-95 | - |
| Pfam | PF00005 | ABC transporter | 1208 | 1356 | 8.0E-33 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 601 | 730 | 9.3E-16 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 894 | 1117 | 2.1E-27 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 264 | 529 | 1.6E-21 | IPR011527 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 253 | 557 | 3.01E-31 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1182 | 1417 | 2.85E-69 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 599 | 791 | 6.5E-48 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 879 | 1171 | 1.7E-47 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 846 | 1172 | 1.4E-53 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 236 | 561 | 2.1E-46 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 598 | 833 | 4.2E-63 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 1174 | 1427 | 6.0E-83 | IPR027417 |
| SMART | SM00382 | AAA_5 | 1217 | 1410 | 6.6E-14 | IPR003593 |
| SMART | SM00382 | AAA_5 | 604 | 778 | 1.2E-13 | IPR003593 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 265 | 542 | 32.690769 | IPR011527 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 879 | 1154 | 33.394287 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 575 | 801 | 19.854731 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1191 | 1425 | 19.041075 | IPR003439 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 703 | 717 | - | IPR017871 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_015076819.1 | putative ABC transporter C family member 15 [Solanum pennellii] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology