Basic Information
Locus ID:
gene-LOC107020744
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
Pentatricopeptide repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 8955766 | 8957917 | + | gene-LOC107020744 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.47 | 60,418.09 Da | 44.82 | 81.07 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01535 | PPR repeat | 209 | 234 | 0.49 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 239 | 288 | 7.9E-12 | IPR002885 |
| Pfam | PF13812 | Pentatricopeptide repeat domain | 369 | 427 | 8.2E-4 | IPR002885 |
| Pfam | PF13812 | Pentatricopeptide repeat domain | 298 | 357 | 1.4E-10 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 457 | 484 | 0.0031 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 144 | 166 | 0.46 | IPR002885 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 236 | 302 | 5.2E-18 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 303 | 371 | 2.0E-17 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 372 | 522 | 5.3E-21 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 83 | 235 | 1.7E-20 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 312 | 346 | 6.2E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 349 | 382 | 0.0021 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 277 | 311 | 2.4E-9 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 457 | 488 | 6.8E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 141 | 167 | 0.003 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 243 | 274 | 9.7E-6 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 310 | 344 | 11.443655 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 275 | 309 | 10.917512 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 345 | 380 | 10.237912 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 381 | 415 | 8.604678 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 454 | 488 | 10.621557 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 240 | 274 | 12.167101 | IPR002885 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G04130.1 | Tetratricopeptide repeat (TPR)-like superfamily protein. | 0 |
| RefSeq | XP_015076710.1 | pentatricopeptide repeat-containing protein At3g04130, mitochondrial-like [Solanum pennellii] | 0 |
| Q9M8W9 | Pentatricopeptide repeat-containing protein At3g04130, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At3g04130 PE=2 SV=2 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg5752, jg9557 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_3540, gene_5373 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g151540 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg26547, Sbi_jg34020, Sbi_jg42730, Sbi_jg45355 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg11218, Seu_jg15074 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00002583 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl35089, Sgl40474, Sgl73833, Sgl77335 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000002884, gene:ENSEOMG00000006357 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.6AG0003540, CQ.Regalona.r1.6BG0003500 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30228080, pistato.v30236350 |
| Apiaceae | Apium graveolens | 2 | Ag1G01844, Ag5G02278 |
| Arecaceae | Cocos nucifera | 3 | COCNU_03G001310, COCNU_03G001330, COCNU_04G007320 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103718091, gene-LOC103718684 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_03.2689.V1.1, AsparagusV1_08.1881.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri15G22017, Ftri9G15803 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT3G04130.1, AT3G22670.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10020419m.g.v1.0, Thhalv10020548m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp3g03100.v2.2, Sp3g20430.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB01g059340.2N, BniB03g024780.2N, BniB07g032460.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G1278 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl07G1351 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno05g03570, gene.Cymno09g09580 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g04160 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG03.712, evm.TU.LG11.999 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00021764, Pov_00022238 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G00954, Lb1G08048 |
| Poaceae | Echinochloa crus-galli | 4 | BH01.2664, BH01.761, CH01.757, Contig309.108 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_2AG0136490, gene-QOZ80_2BG0192130 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.5HG0510080.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_023481, gene-QYE76_061911 |
| Poaceae | Oryza coarctata | 3 | Oco03G014520, Oco04G014970, Oco06G024280 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g38950.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G083600, gene-BS78_04G186700 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr01G005430, Chr09G012410, Chr12G037810, Chr13G008330 |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G415700 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC5AG056230, gene_TRIDC5BG060280 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS5A02G384400.1.cds1, TraesCS5B02G389200.1.cds1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb057030_P001, Zm00001eb246390_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-23463 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g13832, Zma_g494 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG02.2560, evm.TU.LG13.94 |
| Posidoniaceae | Posidonia oceanica | 3 | gene.Posoc01g07610, gene.Posoc04g01610, gene.Posoc05g00670 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_17_RagTag.159, evm.TU.Scaffold_6_RagTag.775 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-15921, nbisL1-mrna-23199 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-16773, nbisL1-mrna-9301 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-14672, nbisL1-mrna-649 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000011l.190, add.evm.TU.utg000013l.29 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00006512 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-19530, nbisL1-mrna-22921 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-15954, nbisL1-mrna-3499 |
| Salicaceae | Populus euphratica | 5 | populus_peu07647, populus_peu21418, populus_peu21419 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132609668, gene-LOC132641233 |
| Solanaceae | Solanum chilense | 2 | SOLCI004820900, SOLCI007024500 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107020744, gene-LOC107031368 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.19726_chr07_+, gene_15533 |
| Tamaricaceae | Tamarix chinensis | 2 | TC04G0518, TC09G0412 |
| Zosteraceae | Zostera marina | 3 | Zosma01g34550.v3.1, Zosma01g40775.v3.1, Zosma04g00720.v3.1 |