Basic Information
Locus ID:
gene-LOC107020639
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Short Name:
RdRP
Description:
Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 2254691 | 2263593 | - | gene-LOC107020639 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.66 | 126,950.81 Da | 36.39 | 82.94 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00590 | RRM_SF | 5 | 72 | 2.4952E-5 | - |
| Pfam | PF05183 | RNA dependent RNA polymerase | 362 | 935 | 2.4E-184 | IPR007855 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 3 | 73 | 6.93E-6 | IPR035979 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 3 | 88 | 8.808147 | IPR000504 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G14790.1 | RNA-dependent RNA polymerase 1. Encodes RNA-dependent RNA polymerase. While not required for virus-induced post-transcriptional gene silencing (PTGS), it can promote turnover of viral RNAs in infected plants. Nomenclature according to Xie, et al. (2004). Involved in the production of Cucumber Mosaic Virus siRNAs. | 0 |
| RefSeq | XP_015076567.1 | probable RNA-dependent RNA polymerase 1 [Solanum pennellii] | 0 |
| Q9LQV2 | RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana OX=3702 GN=RDR1 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology