Basic Information
Locus ID:
gene-LOC107020475
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
C-terminal to LisH motif.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 41700741 | 41711232 | - | gene-LOC107020475 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.82 | 70,390.94 Da | 45.77 | 98.49 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 312 | 604 | 3.98799E-54 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 310 | 346 | 0.0015 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 396 | 434 | 0.034 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 523 | 561 | 0.062 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 356 | 392 | 0.0042 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 567 | 604 | 1.5E-7 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 306 | 604 | 3.42E-63 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 304 | 568 | 1.2E-58 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 569 | 627 | 1.3E-8 | IPR015943 |
| SMART | SM00320 | WD40_4 | 565 | 605 | 2.3E-11 | IPR001680 |
| SMART | SM00320 | WD40_4 | 308 | 347 | 2.1E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 478 | 516 | 2.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 353 | 392 | 6.4E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 395 | 434 | 0.0017 | IPR001680 |
| SMART | SM00320 | WD40_4 | 436 | 476 | 1.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 520 | 562 | 1.2 | IPR001680 |
| SMART | SM00668 | ctlh | 142 | 199 | 1.6E-6 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 572 | 614 | 14.685726 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 414 | 436 | 9.138305 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 548 | 571 | 9.205141 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 360 | 397 | 11.181047 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 572 | 607 | 11.761044 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 315 | 349 | 11.143396 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 315 | 349 | 9.335602 | - |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 109 | 141 | 8.695863 | IPR006594 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 142 | 199 | 10.652412 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 360 | 401 | 14.485216 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 334 | 348 | - | IPR019775 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G08560.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_015076342.1 | WD repeat-containing protein 26 homolog isoform X1 [Solanum pennellii] | 0 |
| Q9FNN2 | WD repeat-containing protein 26 homolog OS=Arabidopsis thaliana OX=3702 GN=WDR26 PE=1 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology