Basic Information
Locus ID:
gene-LOC107020448
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 76878691 | 76899627 | - | gene-LOC107020448 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.68 | 131,022.69 Da | 40.50 | 79.69 | -0.64 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02659 | peptidase_C19C | 198 | 526 | 1.98114E-166 | - |
| CDD | cd00121 | MATH | 57 | 180 | 1.46697E-37 | IPR002083 |
| Pfam | PF12436 | ICP0-binding domain of Ubiquitin-specific protease 7 | 625 | 877 | 1.9E-73 | IPR024729 |
| Pfam | PF00917 | MATH domain | 63 | 181 | 9.8E-19 | IPR002083 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 200 | 521 | 3.0E-47 | IPR001394 |
| Pfam | PF14533 | Ubiquitin-specific protease C-terminal | 887 | 1095 | 1.0E-56 | IPR029346 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 53 | 186 | 1.31E-40 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 195 | 550 | 8.05E-96 | IPR038765 |
| Gene3D | G3DSA:3.10.20.90 | - | 685 | 802 | 8.2E-43 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 803 | 900 | 8.4E-26 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 196 | 525 | 1.5E-88 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 53 | 195 | 7.0E-50 | IPR008974 |
| SMART | SM00061 | math_3 | 57 | 161 | 2.9E-19 | IPR002083 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 55 | 180 | 38.724274 | IPR002083 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 200 | 524 | 40.117573 | IPR028889 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 440 | 457 | - | IPR018200 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 201 | 216 | - | IPR018200 |
| Coils | Coil | Coil | 540 | 560 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G06600.2 | ubiquitin-specific protease 12. Encodes a ubiquitin-specific protease. | 0 |
| RefSeq | XP_015076300.1 | ubiquitin carboxyl-terminal hydrolase 12-like isoform X1 [Solanum pennellii] | 0 |
| Q9FPT1 | Ubiquitin C-terminal hydrolase 12 OS=Arabidopsis thaliana OX=3702 GN=UBP12 PE=1 SV=2 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology