Basic Information
Locus ID:
gene-LOC107020339
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
Zinc-ribbon
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 3543769 | 3554444 | + | gene-LOC107020339 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.79 | 138,865.98 Da | 56.44 | 69.64 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12108 | Hr-like | 318 | 446 | 1.22147E-19 | - |
| CDD | cd12108 | Hr-like | 61 | 187 | 5.59623E-32 | - |
| CDD | cd12108 | Hr-like | 658 | 813 | 2.8161E-28 | - |
| CDD | cd16464 | RING-H2_Pirh2 | 1124 | 1167 | 6.21423E-16 | - |
| Pfam | PF14599 | Zinc-ribbon | 1172 | 1229 | 1.4E-23 | IPR039512 |
| Pfam | PF05495 | CHY zinc finger | 996 | 1071 | 1.1E-18 | IPR008913 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 58 | 189 | 3.4E-11 | IPR012312 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 654 | 751 | 1.6E-6 | IPR012312 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 316 | 448 | 9.3E-10 | IPR012312 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 1062 | 1117 | 1.57E-14 | IPR037275 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 991 | 1052 | 6.67E-17 | IPR037274 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1124 | 1173 | 2.34E-7 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 56 | 207 | 7.2E-36 | - |
| Gene3D | G3DSA:2.20.28.10 | - | 1195 | 1236 | 4.8E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1120 | 1169 | 1.1E-8 | IPR013083 |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 316 | 464 | 5.8E-21 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 650 | 884 | 2.8E-23 | - |
| SMART | SM00184 | ring_2 | 1125 | 1166 | 2.1E-4 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 989 | 1058 | 25.66547 | IPR008913 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 1061 | 1124 | 29.019588 | IPR017921 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 1125 | 1167 | 10.733671 | IPR001841 |
| Coils | Coil | Coil | 736 | 756 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G18290.1 | zinc finger protein-related. Encodes BRUTUS (BTS), a putative E3 ligase protein with metal ion binding and DNA binding domains, which negatively regulates the response to iron deficiency. | 0 |
| RefSeq | XP_015076143.1 | zinc finger protein BRUTUS-like isoform X1 [Solanum pennellii] | 0 |
| Q8LPQ5 | Zinc finger protein BRUTUS OS=Arabidopsis thaliana OX=3702 GN=BTS PE=1 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology