Basic Information
Locus ID:
gene-LOC107020301
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
RQC
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 103048333 | 103060815 | + | gene-LOC107020301 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.93 | 131,928.33 Da | 45.41 | 75.25 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17920 | DEXHc_RecQ | 438 | 640 | 6.97719E-103 | - |
| CDD | cd18794 | SF2_C_RecQ | 641 | 773 | 2.65018E-69 | - |
| Pfam | PF16124 | RecQ zinc-binding | 775 | 857 | 6.8E-16 | IPR032284 |
| Pfam | PF09382 | RQC domain | 864 | 978 | 1.5E-22 | IPR018982 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 452 | 620 | 1.9E-17 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 659 | 763 | 1.3E-17 | IPR001650 |
| Pfam | PF00570 | HRDC domain | 1024 | 1090 | 6.2E-13 | IPR002121 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 639 | 907 | 1.7E-58 | IPR027417 |
| SUPERFAMILY | SSF47819 | HRDC-like | 1018 | 1093 | 1.29E-12 | IPR010997 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 268 | 782 | 2.38E-42 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 641 | 860 | 1.7E-66 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 414 | 640 | 1.9E-91 | IPR027417 |
| Gene3D | G3DSA:1.10.10.10 | - | 864 | 974 | 9.0E-20 | IPR036388 |
| Gene3D | G3DSA:1.10.150.80 | HRDC domain | 1012 | 1097 | 4.0E-19 | IPR044876 |
| SMART | SM00487 | ultradead3 | 446 | 649 | 4.6E-31 | IPR014001 |
| SMART | SM00490 | helicmild6 | 683 | 764 | 7.7E-28 | IPR001650 |
| SMART | SM00956 | RQC_2 | 866 | 977 | 6.5E-30 | IPR018982 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 442 | 917 | 5.6E-169 | IPR004589 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 458 | 633 | 21.342274 | IPR014001 |
| ProSiteProfiles | PS50206 | Rhodanese domain profile. | 673 | 715 | 10.255974 | IPR001763 |
| ProSiteProfiles | PS50967 | HRDC domain profile. | 1018 | 1100 | 17.173141 | IPR002121 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 655 | 812 | 19.656086 | IPR001650 |
| ProSitePatterns | PS00690 | DEAH-box subfamily ATP-dependent helicases signature. | 572 | 581 | - | IPR002464 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 990 | 1013 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 994 | 1013 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1099 | 1134 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1111 | 1125 | - | - |
| Coils | Coil | Coil | 298 | 318 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G10930.1 | DNA helicase (RECQl4A). DNA helicase involved in the maintenance of genome stability by modulation of the DNA damage response and suppression of homologous recombination. | 0 |
| RefSeq | XP_015076117.1 | ATP-dependent DNA helicase Q-like 4A [Solanum pennellii] | 0 |
| Q8L840 | ATP-dependent DNA helicase Q-like 4A OS=Arabidopsis thaliana OX=3702 GN=RECQL4A PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology