HalophFGD

  • Home
  • Species
  • Search
  • Tools
    • Blast
    • GO enrichment
    • KEGG enrichment
    • Genome browser
    • Sequence extract
    • Network
    • Motif Enrichment
    • Motif Scan
    • Primer Design
  • Download
  • Manual
  • Contact
Basic Information
Locus ID: gene-LOC107020257
Species & Taxonomic ID: Solanum pennellii & 28526
Genome Assembly: GCF_001406875.1
Description: domain in FBox and BRCT domain containing plant proteins
Maps and Mapping Data
Chromosome Start End Strand ID
chr5 3067358 3068695 + gene-LOC107020257
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
8.80 51,170.67 Da 49.26 97.19 -0.14
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
SUPERFAMILY SSF81383 F-box domain 17 63 3.11E-7 IPR036047
SUPERFAMILY SSF52047 RNI-like 110 377 4.71E-12 -
Gene3D G3DSA:3.80.10.10 Ribonuclease Inhibitor 83 373 9.2E-13 IPR032675
SMART SM00579 9598neu4hmm 353 427 8.0E-4 IPR006566
Gene Ontology
Molecular Function:
GO:0005515 (protein binding)
Best hit
Source Best Hit ID Description E-value
TAIR AT3G62430.1 Protein with RNI-like/FBD-like domains. 0
RefSeq XP_015076033.1 F-box/FBD/LRR-repeat protein At1g13570-like [Solanum pennellii] 0
Swiss-Prot Q9LZP7 F-box protein At3g62430 OS=Arabidopsis thaliana OX=3702 GN=At3g62430 PE=2 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network
🔍 Protein-Protein Interaction Network
Orthology
Family Species Count Orthologous Genes
Salicaceae Populus euphratica 1 populus_peu17759
Solanaceae Lycium barbarum 8 gene-LOC132601437, gene-LOC132628337, gene-LOC132628338 ...
gene-LOC132630257, gene-LOC132640169, gene-LOC132641237, gene-LOC132642201, gene-LOC132642651
Solanaceae Solanum pennellii 2 gene-LOC107020257, gene-LOC107020267
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.