Basic Information
Locus ID:
gene-LOC107019990
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
Leafy cotyledon 1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 348485 | 350727 | + | gene-LOC107019990 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.90 | 23,406.68 Da | 61.91 | 59.62 | -0.67 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00808 | Histone-like transcription factor (CBF/NF-Y) and archaeal histone | 58 | 122 | 4.8E-23 | IPR003958 |
| SUPERFAMILY | SSF47113 | Histone-fold | 55 | 152 | 6.99E-36 | IPR009072 |
| Gene3D | G3DSA:1.10.20.10 | Histone, subunit A | 47 | 166 | 2.3E-38 | IPR009072 |
| PRINTS | PR00615 | CCAAT-binding transcription factor subunit A signature | 105 | 123 | 1.4E-14 | - |
| PRINTS | PR00615 | CCAAT-binding transcription factor subunit A signature | 124 | 142 | 1.4E-14 | - |
| PRINTS | PR00615 | CCAAT-binding transcription factor subunit A signature | 86 | 104 | 1.4E-14 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 178 | 211 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 179 | 198 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 35 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G47670.1 | nuclear factor Y, subunit B6. Encodes LEC1-Like (L1L), closely related to LEC1 (Leafy Cotyledon1). Functions as a regulator of embryo development. | 0 |
| RefSeq | XP_015075823.1 | nuclear transcription factor Y subunit B-6-like [Solanum pennellii] | 0 |
| Q84W66 | Nuclear transcription factor Y subunit B-6 OS=Arabidopsis thaliana OX=3702 GN=NFYB6 PE=1 SV=2 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Solanaceae | Solanum chilense | 1 | SOLCI003360700 |
| Solanaceae | Solanum pennellii | 6 | gene-LOC107019990, gene-LOC107020059, gene-LOC107020084 ... |
| Zosteraceae | Zostera marina | 1 | Zosma05g03370.v3.1 |