Basic Information
Locus ID:
gene-LOC107019849
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
F-Box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 70284515 | 70285869 | + | gene-LOC107019849 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.08 | 42,472.45 Da | 27.18 | 91.49 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 2 | 41 | 7.9E-9 | IPR001810 |
| Pfam | PF08268 | F-box associated domain | 198 | 322 | 2.6E-6 | IPR013187 |
| SUPERFAMILY | SSF81383 | F-box domain | 2 | 65 | 5.23E-13 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 1 | 41 | 7.9E-7 | - |
| SMART | SM00256 | fbox_2 | 2 | 42 | 7.1E-6 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 107 | 334 | 1.1E-21 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 1 | 41 | 10.875178 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G22700.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_015075700.1 | F-box protein At3g22700-like [Solanum pennellii] | 0 |
| Q9LUJ1 | F-box protein At3g22700 OS=Arabidopsis thaliana OX=3702 GN=At3g22700 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Solanaceae | Lycium barbarum | 3 | gene-LOC132619443, gene-LOC132619444, gene-LOC132628912 |
| Solanaceae | Solanum chilense | 3 | SOLCI001075800, SOLCI004757200, SOLCI004757300 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107019849, gene-LOC107025258, gene-LOC107026181 |