Basic Information
Locus ID:
gene-LOC107019733
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 72214777 | 72216439 | + | gene-LOC107019733 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.67 | 41,452.93 Da | 57.91 | 66.80 | -0.83 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03004 | Plant transposase (Ptta/En/Spm family) | 153 | 266 | 2.0E-15 | IPR004252 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 328 | 349 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 323 | 369 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 183 | 197 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 26 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 174 | 200 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_027772694.1 | uncharacterized protein LOC107019733 [Solanum pennellii] | 0 |
| TrEMBL | A0A2G2XGT0 | U-box domain-containing protein 4 OS=Capsicum baccatum OX=33114 GN=CQW23_05184 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Suaeda glauca | 1 | Sgl36013 |
| Solanaceae | Lycium barbarum | 35 | gene-LOC132601393, gene-LOC132607984, gene-LOC132608722 ... |
| Solanaceae | Solanum chilense | 11 | SOLCI000202400, SOLCI000775100, SOLCI001269100 ... |
| Solanaceae | Solanum pennellii | 18 | gene-LOC107001376, gene-LOC107003998, gene-LOC107006315 ... |