Basic Information
Locus ID:
gene-LOC107019434
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
DNA recombination
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 31609290 | 31614914 | + | gene-LOC107019434 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.78 | 54,366.40 Da | 41.37 | 90.02 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04480 | RPA1_DBD_A_like | 18 | 72 | 1.81462E-11 | - |
| CDD | cd04481 | RPA1_DBD_B_like | 104 | 199 | 1.47981E-10 | - |
| SUPERFAMILY | SSF50249 | Nucleic acid-binding proteins | 232 | 308 | 1.15E-11 | IPR012340 |
| SUPERFAMILY | SSF50249 | Nucleic acid-binding proteins | 101 | 203 | 9.14E-9 | IPR012340 |
| SUPERFAMILY | SSF50249 | Nucleic acid-binding proteins | 3 | 76 | 1.2E-7 | IPR012340 |
| Gene3D | G3DSA:2.40.50.140 | - | 3 | 79 | 6.7E-10 | - |
| Gene3D | G3DSA:2.40.50.140 | - | 217 | 330 | 3.1E-14 | - |
| Gene3D | G3DSA:2.40.50.140 | - | 80 | 216 | 4.9E-21 | - |
KEGG Pathway
KO Term:
Pathway:
ko03030 (DNA replication)
map03030 (DNA replication)
ko03420 (Nucleotide excision repair)
map03420 (Nucleotide excision repair)
ko03430 (Mismatch repair)
map03430 (Mismatch repair)
ko03440 (Homologous recombination)
map03440 (Homologous recombination)
ko03460 (Fanconi anemia pathway)
map03460 (Fanconi anemia pathway)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_015075426.1 | replication factor A protein 1-like [Solanum pennellii] | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology