Basic Information
Locus ID:
gene-LOC107019227
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
F-Box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 5301940 | 5303019 | + | gene-LOC107019227 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.83 | 41,945.78 Da | 46.47 | 89.58 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 9 | 50 | 1.4E-6 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 10 | 74 | 1.31E-9 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 5 | 81 | 3.0E-7 | - |
| SMART | SM00256 | fbox_2 | 10 | 50 | 8.4E-8 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 117 | 253 | 3.7E-18 | IPR017451 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G23160.1 | F-box family protein. | 0 |
| RefSeq | XP_015075269.1 | F-box protein At2g23160-like [Solanum pennellii] | 0 |
| Q1KS79 | F-box protein At2g23160 OS=Arabidopsis thaliana OX=3702 GN=At2g23160 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Solanaceae | Lycium barbarum | 5 | gene-LOC132607706, gene-LOC132639922, gene-LOC132639923 ... |
| Solanaceae | Solanum chilense | 2 | SOLCI000279300, SOLCI004455400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107019227 |