Basic Information
Locus ID:
gene-LOC107019186
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
Domain of unknown function (DUF569)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 1520188 | 1535724 | + | gene-LOC107019186 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.76 | 138,423.17 Da | 49.46 | 78.61 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04601 | Domain of unknown function (DUF569) | 496 | 640 | 1.6E-49 | IPR007679 |
| Pfam | PF04601 | Domain of unknown function (DUF569) | 1 | 144 | 3.6E-61 | IPR007679 |
| Pfam | PF00098 | Zinc knuckle | 1207 | 1223 | 9.6E-5 | IPR001878 |
| Pfam | PF14223 | gag-polypeptide of LTR copia-type | 1036 | 1172 | 9.8E-16 | - |
| Pfam | PF04601 | Domain of unknown function (DUF569) | 206 | 347 | 2.4E-75 | IPR007679 |
| Pfam | PF04601 | Domain of unknown function (DUF569) | 699 | 840 | 8.2E-67 | IPR007679 |
| SUPERFAMILY | SSF50405 | Actin-crosslinking proteins | 210 | 352 | 1.83E-25 | IPR008999 |
| SUPERFAMILY | SSF57756 | Retrovirus zinc finger-like domains | 1194 | 1225 | 4.71E-7 | IPR036875 |
| SUPERFAMILY | SSF50405 | Actin-crosslinking proteins | 499 | 642 | 8.61E-19 | IPR008999 |
| SUPERFAMILY | SSF50405 | Actin-crosslinking proteins | 4 | 148 | 4.58E-20 | IPR008999 |
| SUPERFAMILY | SSF50405 | Actin-crosslinking proteins | 703 | 845 | 6.15E-24 | IPR008999 |
| Gene3D | G3DSA:2.80.10.50 | - | 6 | 146 | 4.6E-15 | - |
| Gene3D | G3DSA:2.80.10.50 | - | 501 | 640 | 2.2E-13 | - |
| Gene3D | G3DSA:2.80.10.50 | - | 707 | 832 | 8.4E-17 | - |
| Gene3D | G3DSA:4.10.60.10 | - | 1182 | 1226 | 5.1E-7 | - |
| Gene3D | G3DSA:2.80.10.50 | - | 214 | 332 | 1.6E-17 | - |
| SMART | SM00343 | c2hcfinal6 | 1207 | 1223 | 9.8E-4 | IPR001878 |
| ProSiteProfiles | PS50158 | Zinc finger CCHC-type profile. | 1207 | 1223 | 9.784581 | IPR001878 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1181 | 1201 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 862 | 884 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 865 | 884 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G27100.1 | Actin cross-linking protein. | 0 |
| RefSeq | XP_015075240.1 | uncharacterized protein LOC107019186 [Solanum pennellii] | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology