Basic Information
Locus ID:
gene-LOC107019114
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Short Name:
NTMC2T4.1
Description:
Protein kinase C conserved region 2 (CalB)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 70903720 | 70912408 | - | gene-LOC107019114 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.81 | 55,356.87 Da | 28.20 | 102.63 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 265 | 352 | 3.0676E-26 | - |
| Pfam | PF00168 | C2 domain | 263 | 358 | 8.5E-22 | IPR000008 |
| Pfam | PF17047 | Synaptotagmin-like mitochondrial-lipid-binding domain | 68 | 248 | 4.9E-18 | IPR039010 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 261 | 390 | 5.8E-28 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 258 | 416 | 2.6E-30 | IPR035892 |
| SMART | SM00239 | C2_3c | 264 | 361 | 4.9E-20 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 246 | 364 | 19.291718 | IPR000008 |
| ProSiteProfiles | PS51847 | Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. | 66 | 249 | 24.75449 | IPR031468 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 476 | 499 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 476 | 506 | - | - |
| Coils | Coil | Coil | 390 | 417 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G61050.1 | Calcium-dependent lipid-binding (CaLB domain) family protein. | 0 |
| RefSeq | XP_027772810.1 | synaptotagmin-4-like [Solanum pennellii] | 0 |
| Q9LEX1 | Calcium-dependent lipid-binding protein OS=Arabidopsis thaliana OX=3702 GN=CLB PE=1 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology