Basic Information
Locus ID:
gene-LOC107018860
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
Pentatricopeptide repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 70221106 | 70229816 | + | gene-LOC107018860 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.25 | 79,886.24 Da | 35.01 | 97.26 | 0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01535 | PPR repeat | 111 | 140 | 0.0024 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 615 | 636 | 0.69 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 143 | 171 | 1.1E-4 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 242 | 288 | 7.6E-11 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 440 | 468 | 0.0018 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 412 | 434 | 3.2E-4 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 339 | 382 | 2.2E-7 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 538 | 587 | 8.1E-12 | IPR002885 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 571 | 720 | 2.6E-22 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 7 | 164 | 6.7E-25 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 452 | 570 | 3.6E-22 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 292 | 389 | 3.7E-13 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 165 | 291 | 1.5E-18 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 578 | 611 | 3.0E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 541 | 575 | 7.3E-7 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 244 | 277 | 9.8E-6 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 412 | 434 | 1.8E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 143 | 175 | 2.0E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 111 | 140 | 0.0026 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 342 | 376 | 0.0011 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 575 | 610 | 9.602157 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 109 | 139 | 8.637562 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 539 | 573 | 10.818861 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 140 | 174 | 9.624079 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 407 | 441 | 9.251395 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 340 | 374 | 9.985802 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 242 | 276 | 11.893068 | IPR002885 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G49740.1 | Tetratricopeptide repeat (TPR)-like superfamily protein. | 0 |
| RefSeq | XP_027772715.1 | pentatricopeptide repeat-containing protein At3g49740 [Solanum pennellii] | 0 |
| Q9M2Y4 | Pentatricopeptide repeat-containing protein At3g49740 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E84 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg30734 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_16765 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah027500 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_6g128540, BVRB_6g128580 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg13215, Sbi_jg52603 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg9214 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00010092 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl34551, Sgl39966 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000000450, gene:ENSEOMG00000027756 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30204700, pistato.v30204710 |
| Apiaceae | Apium graveolens | 2 | Ag9G00075, AgUnG01470 |
| Arecaceae | Cocos nucifera | 1 | COCNU_14G007320 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103721431 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.3888.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri1G01128 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G49740.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10010148m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g12340.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g075510.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G0443 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G0460 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno06g00820 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-6681 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.2605 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.1610, evm.TU.LG12.281 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g27490 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_3_RagTag.1177 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-792 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-2432 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000019l.237 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-19235 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-1871 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132640585 |
| Solanaceae | Solanum chilense | 1 | SOLCI004421600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107018860 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.25187_chr10_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC02G3545 |
| Zosteraceae | Zostera marina | 1 | Zosma06g01920.v3.1 |