Basic Information
Locus ID:
gene-LOC107018851
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
DNA repair protein recA homolog 3, mitochondrial
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 77342360 | 77346336 | - | gene-LOC107018851 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.43 | 45,118.04 Da | 31.74 | 91.89 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00154 | recA bacterial DNA recombination protein | 62 | 326 | 4.5E-118 | IPR013765 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 62 | 325 | 7.92E-56 | IPR027417 |
| SUPERFAMILY | SSF54752 | RecA protein, C-terminal domain | 326 | 383 | 4.97E-7 | IPR023400 |
| Gene3D | G3DSA:3.40.50.300 | - | 89 | 388 | 3.9E-111 | IPR027417 |
| SMART | SM00382 | AAA_5 | 112 | 286 | 2.6E-7 | IPR003593 |
| TIGRFAM | TIGR02012 | tigrfam_recA: protein RecA | 59 | 382 | 2.7E-134 | IPR013765 |
| ProSiteProfiles | PS50162 | RecA family profile 1. | 90 | 249 | 35.445141 | IPR020588 |
| ProSiteProfiles | PS50163 | RecA family profile 2. | 259 | 330 | 26.475838 | IPR020587 |
| ProSitePatterns | PS00321 | recA signature. | 271 | 279 | - | IPR020584 |
| PRINTS | PR00142 | RecA protein signature | 268 | 296 | 6.7E-75 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 301 | 330 | 6.7E-75 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 148 | 177 | 6.7E-75 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 220 | 249 | 6.7E-75 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 355 | 372 | 6.7E-75 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 182 | 211 | 6.7E-75 | IPR013765 |
| Hamap | MF_00268 | Protein RecA [recA]. | 59 | 387 | 42.922073 | IPR013765 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 386 | 418 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G19490.1 | recA DNA recombination family protein. | 0 |
| RefSeq | XP_015074920.1 | DNA repair protein recA homolog 3, mitochondrial [Solanum pennellii] | 0 |
| Q9ZUP2 | DNA repair protein recA homolog 3, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At2g19490 PE=2 SV=2 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology