Basic Information
Locus ID:
gene-LOC107018846
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
Anaphase-promoting complex subunit 11 RING-H2 finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 5760822 | 5765186 | + | gene-LOC107018846 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.53 | 32,687.99 Da | 59.28 | 60.33 | -0.66 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12678 | RING-H2 zinc finger domain | 240 | 289 | 3.8E-10 | IPR024766 |
| SUPERFAMILY | SSF57850 | RING/U-box | 244 | 294 | 5.05E-15 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 242 | 299 | 5.3E-14 | IPR013083 |
| SMART | SM00184 | ring_2 | 249 | 289 | 2.1E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 249 | 289 | 11.943417 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 170 | 205 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 189 | 203 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 141 | 160 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G15790.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_015074914.1 | E3 ubiquitin-protein ligase Praja-1-like [Solanum pennellii] | 0 |
| Q8LE94 | E3 ubiquitin-protein ligase At3g02290 OS=Arabidopsis thaliana OX=3702 GN=At3g02290 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Solanaceae | Lycium barbarum | 1 | gene-LOC132641937 |
| Solanaceae | Solanum chilense | 1 | SOLCI006537500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107018846 |