Basic Information
Locus ID:
gene-LOC107018790
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 54049234 | 54063702 | + | gene-LOC107018790 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.40 | 88,494.80 Da | 42.30 | 82.09 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 519 | 798 | 2.36642E-47 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 517 | 544 | 0.0013 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 554 | 589 | 2.1E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 679 | 714 | 8.5E-5 | IPR001680 |
| Pfam | PF08513 | LisH | 10 | 36 | 2.8E-5 | IPR006594 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 518 | 798 | 1.68E-53 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 645 | 798 | 1.0E-25 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 477 | 644 | 2.5E-31 | IPR015943 |
| SMART | SM00320 | WD40_4 | 720 | 759 | 1.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 636 | 672 | 57.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 550 | 589 | 4.7E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 676 | 714 | 5.7E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 762 | 798 | 2.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 506 | 547 | 0.037 | IPR001680 |
| SMART | SM00320 | WD40_4 | 593 | 633 | 2.7E-4 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 8 | 40 | 8.311114 | IPR006594 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 557 | 590 | 12.367405 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 557 | 598 | 15.120162 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 600 | 642 | 9.639578 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 576 | 590 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 359 | 379 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G32551.1 | LisH dimerisation motif;WD40/YVTN repeat-like-containing domain. LEUNIG regulates floral organ identity,gynoecium and ovule development. Negatively regulates AGAMOUS . Encodes a glutamine-rich protein with seven WD repeats similar to transcriptional corepressors. | 0 |
| RefSeq | XP_015074851.1 | transcriptional corepressor LEUNIG-like isoform X1 [Solanum pennellii] | 0 |
| Q9FUY2 | Transcriptional corepressor LEUNIG OS=Arabidopsis thaliana OX=3702 GN=LUG PE=1 SV=2 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Solanaceae | Solanum chilense | 1 | SOLCI004308000 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107018790 |