Basic Information
Locus ID:
gene-LOC107018601
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
NAC domain-containing protein 8 isoform X1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 4502265 | 4507547 | - | gene-LOC107018601 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.83 | 49,039.56 Da | 53.61 | 62.97 | -0.89 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02365 | No apical meristem (NAM) protein | 57 | 195 | 3.5E-21 | IPR003441 |
| SUPERFAMILY | SSF101941 | NAC domain | 42 | 214 | 3.01E-39 | IPR036093 |
| Gene3D | G3DSA:2.170.150.80 | NAC domain | 65 | 219 | 9.9E-30 | IPR036093 |
| ProSiteProfiles | PS51005 | NAC domain profile. | 56 | 214 | 30.939356 | IPR003441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 239 | 261 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G25580.1 | NAC (No Apical Meristem) domain transcriptional regulator superfamily protein. Encodes suppressor of gamma response 1 (SOG1), a putative transcription factor governing multiple responses to DNA damage. | 0 |
| RefSeq | XP_015074611.1 | SUPPRESSOR OF GAMMA RESPONSE 1 [Solanum pennellii] | 0 |
| Q6NQK2 | SUPPRESSOR OF GAMMA RESPONSE 1 OS=Arabidopsis thaliana OX=3702 GN=SOG1 PE=1 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology