Basic Information
Locus ID:
gene-LOC107018492
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
Pentatricopeptide repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 2408989 | 2412964 | + | gene-LOC107018492 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.82 | 82,503.00 Da | 43.67 | 67.58 | -0.76 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01535 | PPR repeat | 433 | 461 | 1.5E-4 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 340 | 357 | 1.2 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 402 | 430 | 0.003 | IPR002885 |
| Pfam | PF14432 | DYW family of nucleic acid deaminases | 596 | 717 | 2.8E-38 | IPR032867 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 448 | 617 | 1.5E-15 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 312 | 432 | 1.7E-15 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 402 | 430 | 5.3E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 433 | 465 | 3.9E-6 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 430 | 464 | 10.785976 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 399 | 429 | 9.361008 | IPR002885 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 96 | 121 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 96 | 116 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G25580.1 | Tetratricopeptide repeat (TPR)-like superfamily protein. | 0 |
| RefSeq | XP_015074474.1 | pentatricopeptide repeat-containing protein At2g34370, mitochondrial-like isoform X1 [Solanum pennellii] | 0 |
| Q680H3 | Pentatricopeptide repeat-containing protein At2g25580 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H75 PE=2 SV=2 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology