Basic Information
Locus ID:
gene-LOC107018436
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
Belongs to the glycosyl hydrolase 28 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 2016285 | 2019465 | - | gene-LOC107018436 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.92 | 52,986.46 Da | 51.52 | 80.79 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00295 | Glycosyl hydrolases family 28 | 129 | 443 | 1.1E-83 | IPR000743 |
| SUPERFAMILY | SSF51126 | Pectin lyase-like | 93 | 486 | 3.42E-122 | IPR011050 |
| Gene3D | G3DSA:2.160.20.10 | - | 87 | 478 | 1.0E-115 | IPR012334 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 38 | 80 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 31 | 83 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48100.1 | Pectin lyase-like superfamily protein. | 0 |
| RefSeq | XP_015074404.1 | polygalacturonase At1g48100 [Solanum pennellii] | 0 |
| Q949Z1 | Polygalacturonase At1g48100 OS=Arabidopsis thaliana OX=3702 GN=At1g48100 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology