Basic Information
Locus ID:
gene-LOC107018050
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
Possibly involved in carbohydrate binding
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 1713142 | 1720327 | - | gene-LOC107018050 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.32 | 54,621.19 Da | 39.16 | 90.40 | 0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00332 | Glycosyl hydrolases family 17 | 30 | 348 | 2.1E-78 | IPR000490 |
| Pfam | PF07983 | X8 domain | 367 | 437 | 2.9E-18 | IPR012946 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 30 | 349 | 1.94E-83 | IPR017853 |
| Gene3D | G3DSA:3.20.20.80 | Glycosidases | 29 | 355 | 9.4E-112 | - |
| Gene3D | G3DSA:1.20.58.1040 | - | 360 | 452 | 3.2E-10 | - |
| SMART | SM00768 | X8_cls | 366 | 451 | 4.1E-47 | IPR012946 |
| ProSitePatterns | PS00587 | Glycosyl hydrolases family 17 signature. | 264 | 277 | - | IPR000490 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G01630.1 | O-Glycosyl hydrolases family 17 protein. | 0 |
| RefSeq | XP_015073894.1 | glucan endo-1,3-beta-glucosidase 3-like [Solanum pennellii] | 0 |
| Q9ZU91 | Glucan endo-1,3-beta-glucosidase 3 OS=Arabidopsis thaliana OX=3702 GN=At2g01630 PE=2 SV=2 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology