Basic Information
Locus ID:
gene-LOC107017999
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
XPC-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 941819 | 953055 | - | gene-LOC107017999 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.76 | 41,927.62 Da | 57.35 | 82.87 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01805 | Ubl_Rad23 | 1 | 74 | 4.55318E-31 | - |
| Pfam | PF00240 | Ubiquitin family | 3 | 76 | 8.9E-19 | IPR000626 |
| Pfam | PF00627 | UBA/TS-N domain | 172 | 207 | 1.6E-13 | IPR015940 |
| Pfam | PF09280 | XPC-binding domain | 275 | 330 | 2.1E-22 | IPR015360 |
| Pfam | PF00627 | UBA/TS-N domain | 357 | 392 | 5.9E-11 | IPR015940 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 79 | 6.91E-22 | IPR029071 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 271 | 336 | 5.76E-22 | IPR036353 |
| SUPERFAMILY | SSF46934 | UBA-like | 339 | 399 | 1.44E-14 | IPR009060 |
| SUPERFAMILY | SSF46934 | UBA-like | 167 | 222 | 2.11E-11 | IPR009060 |
| Gene3D | G3DSA:1.10.10.540 | - | 265 | 331 | 1.0E-27 | IPR036353 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 80 | 4.5E-29 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 162 | 212 | 4.2E-21 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 349 | 396 | 9.4E-23 | - |
| SMART | SM00213 | ubq_7 | 1 | 75 | 6.2E-22 | IPR000626 |
| SMART | SM00727 | CBM | 273 | 316 | 5.3E-6 | IPR006636 |
| SMART | SM00165 | uba_6 | 357 | 394 | 3.6E-9 | IPR015940 |
| SMART | SM00165 | uba_6 | 169 | 209 | 9.6E-5 | IPR015940 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 1 | 400 | 3.2E-118 | IPR004806 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 79 | 20.326544 | IPR000626 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 354 | 395 | 14.908409 | IPR015940 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 168 | 210 | 11.992661 | IPR015940 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 351 | 367 | 9.1E-33 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 301 | 323 | 9.1E-33 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 383 | 398 | 9.1E-33 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 368 | 382 | 9.1E-33 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 81 | 116 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 219 | 246 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 81 | 113 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G02540.3 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_015073813.1 | ubiquitin receptor RAD23c-like [Solanum pennellii] | 0 |
| Q84L31 | Ubiquitin receptor RAD23c OS=Arabidopsis thaliana OX=3702 GN=RAD23C PE=1 SV=2 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology