Basic Information
Locus ID:
gene-LOC107017835
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
Receptor protein kinase CLAVATA1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 76169706 | 76174083 | - | gene-LOC107017835 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.36 | 108,641.86 Da | 31.04 | 105.48 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13855 | Leucine rich repeat | 266 | 325 | 5.0E-7 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 529 | 588 | 3.3E-7 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 243 | 264 | 0.34 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 23 | 68 | 1.2E-7 | IPR013210 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 695 | 969 | 4.3E-46 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 688 | 969 | 4.18E-73 | IPR011009 |
| SUPERFAMILY | SSF52047 | RNI-like | 75 | 373 | 1.73E-53 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 361 | 617 | 3.4E-57 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 331 | 628 | 5.5E-84 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 771 | 982 | 2.7E-59 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 25 | 140 | 1.2E-25 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 228 | 327 | 3.9E-26 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 141 | 227 | 2.3E-21 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 665 | 770 | 6.0E-22 | - |
| SMART | SM00369 | LRR_typ_2 | 167 | 190 | 140.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 694 | 969 | 1.2E-28 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 479 | 502 | 280.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 432 | 456 | 160.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 264 | 288 | 86.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 551 | 575 | 130.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 503 | 527 | 150.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 336 | 360 | 28.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 694 | 970 | 38.110222 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 815 | 827 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G75820.1 | Leucine-rich receptor-like protein kinase family protein. Putative receptor kinase with an extracellular leucine-rich domain. Controls shoot and floral meristem size, and contributes to establish and maintain floral meristem identity. Negatively regulated by KAPP (kinase-associated protein phosphatase). CLV3 peptide binds directly CLV1 ectodomain. | 0 |
| RefSeq | XP_015073593.1 | receptor protein kinase CLAVATA1 [Solanum pennellii] | 0 |
| Q9SYQ8 | Receptor protein kinase CLAVATA1 OS=Arabidopsis thaliana OX=3702 GN=CLV1 PE=1 SV=3 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology