Basic Information
Locus ID:
gene-LOC107017621
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
PWWP domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 54158861 | 54165323 | + | gene-LOC107017621 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.46 | 179,800.70 Da | 43.54 | 71.87 | -0.61 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05162 | PWWP | 1056 | 1142 | 3.8331E-30 | - |
| Pfam | PF00855 | PWWP domain | 1056 | 1142 | 4.8E-16 | IPR000313 |
| SUPERFAMILY | SSF63748 | Tudor/PWWP/MBT | 1052 | 1178 | 3.91E-26 | - |
| Gene3D | G3DSA:2.30.30.140 | - | 1049 | 1149 | 1.2E-23 | - |
| SMART | SM00293 | PWWP_4 | 1056 | 1117 | 4.5E-9 | IPR000313 |
| ProSiteProfiles | PS50812 | PWWP domain profile. | 1058 | 1119 | 14.35871 | IPR000313 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 240 | 269 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1311 | 1343 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 996 | 1020 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 252 | 268 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 63 | 86 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1383 | 1402 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1502 | 1518 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 318 | 345 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 65 | 83 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1519 | 1551 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1383 | 1397 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1318 | 1343 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1502 | 1551 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1264 | 1298 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G02950.1 | Tudor/PWWP/MBT superfamily protein. | 0 |
| RefSeq | XP_015073289.1 | uncharacterized protein LOC107017621 [Solanum pennellii] | 0 |
| Q9LYZ0 | PWWP domain-containing protein 5 OS=Arabidopsis thaliana OX=3702 GN=PDP5 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology