Basic Information
Locus ID:
gene-LOC107017456
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
F-Box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 7869602 | 7871044 | + | gene-LOC107017456 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.69 | 30,847.28 Da | 41.45 | 97.41 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF81383 | F-box domain | 14 | 85 | 1.7E-10 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 12 | 99 | 2.6E-6 | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_015073164.1 | probable F-box protein At5g04010 [Solanum pennellii] | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg31353 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_4615 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah022040 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g062290 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg59435, Sbi_jg63212 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg23681 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00020709 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl02821, Sgl07942 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000012518, gene:ENSEOMG00000029847 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0022100, CQ.Regalona.r1.3BG0022810 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30217690 |
| Apiaceae | Apium graveolens | 1 | Ag3G01400 |
| Arecaceae | Cocos nucifera | 1 | COCNU_12G004710 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103705073 |
| Asteraceae | Flaveria trinervia | 1 | Ftri11G01839 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G04010.1 |
| Brassicaceae | Eutrema salsugineum | 5 | Thhalv10015413m.g.v1.0, Thhalv10015674m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g38750.v2.2 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.2543 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00031126 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0036750, gene-QOZ80_1BG0086750 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_055945 |
| Poaceae | Oryza coarctata | 1 | Oco01G022450 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g58670.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G307200 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0601733 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr03G018080, Chr08G023720 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G527200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG047540, gene_TRIDC3BG053720 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G330000.1.cds1, TraesCS3B02G360100.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb150670_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-31343 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g11345 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG13.1267, evm.TU.LG21.899 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-6491 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-2005 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-21092 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-13326 |
| Salicaceae | Populus euphratica | 5 | populus_peu09765, populus_peu09768, populus_peu09769 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132615835, gene-LOC132615870 |
| Solanaceae | Solanum chilense | 1 | SOLCI001799500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107017456 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_11865 |