Basic Information
Locus ID:
gene-LOC107017233
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
Modified RING finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 1907336 | 1908902 | - | gene-LOC107017233 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.93 | 49,997.22 Da | 44.51 | 104.48 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 34 | 76 | 2.54883E-23 | - |
| Pfam | PF04564 | U-box domain | 30 | 101 | 4.1E-21 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 22 | 106 | 2.32E-28 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 143 | 420 | 2.84E-16 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 132 | 421 | 1.9E-17 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 6 | 107 | 4.8E-28 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 33 | 96 | 5.6E-30 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 29 | 103 | 33.164295 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G37490.1 | ARM repeat superfamily protein. | 0 |
| RefSeq | XP_015072988.1 | U-box domain-containing protein 21-like [Solanum pennellii] | 0 |
| Q5PNY6 | U-box domain-containing protein 21 OS=Arabidopsis thaliana OX=3702 GN=PUB21 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology