Basic Information
Locus ID:
gene-LOC107017022
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Short Name:
UBP16
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 71594572 | 71614240 | - | gene-LOC107017022 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.27 | 90,019.89 Da | 58.03 | 71.84 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 641 | 742 | 9.2E-17 | IPR001394 |
| Pfam | PF01753 | MYND finger | 114 | 151 | 5.0E-9 | IPR002893 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 111 | 156 | 2.09E-11 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 638 | 776 | 4.51E-27 | IPR038765 |
| Gene3D | G3DSA:6.10.140.2220 | - | 101 | 155 | 4.1E-12 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 625 | 818 | 7.6E-29 | - |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 114 | 151 | 11.706373 | IPR002893 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 641 | 826 | 17.114491 | IPR028889 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 642 | 657 | - | IPR018200 |
| ProSitePatterns | PS01360 | Zinc finger MYND-type signature. | 114 | 151 | - | IPR002893 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 85 | 104 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 297 | 359 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 172 | 189 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 502 | 539 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 450 | 467 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 254 | 360 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 504 | 519 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 437 | 469 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 474 | 493 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 172 | 209 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 405 | 425 | - | - |
| Coils | Coil | Coil | 41 | 61 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G24560.1 | ubiquitin-specific protease 16. Encodes a ubiquitin-specific protease. There is no evidence for a phenotype in ubp16-1 mutants, however, double mutant analysis with ubp15 mutants reveals a role for UBP16 in plant development and cell proliferation. | 0 |
| RefSeq | XP_015072796.1 | LOW QUALITY PROTEIN: ubiquitin carboxyl-terminal hydrolase 16 [Solanum pennellii] | 0 |
| Q9SB51 | Ubiquitin carboxyl-terminal hydrolase 16 OS=Arabidopsis thaliana OX=3702 GN=UBP16 PE=1 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology