Basic Information
Locus ID:
gene-LOC107016977
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 68274642 | 68279409 | + | gene-LOC107016977 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.82 | 44,849.08 Da | 75.12 | 73.66 | -0.60 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 328 | 397 | 9.5E-7 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 309 | 416 | 2.04E-9 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 322 | 412 | 1.4E-14 | IPR012677 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 326 | 412 | 10.3943 | IPR000504 |
| PRINTS | PR01217 | Proline rich extensin signature | 103 | 115 | 1.7E-11 | - |
| PRINTS | PR01217 | Proline rich extensin signature | 158 | 175 | 1.7E-11 | - |
| PRINTS | PR01217 | Proline rich extensin signature | 137 | 153 | 1.7E-11 | - |
| PRINTS | PR01217 | Proline rich extensin signature | 177 | 202 | 1.7E-11 | - |
| PRINTS | PR01217 | Proline rich extensin signature | 116 | 137 | 1.7E-11 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 94 | 218 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 105 | 166 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 297 | 320 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 181 | 204 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G76940.2 | RNA-binding (RRM/RBD/RNP motifs) family protein. | 0 |
| RefSeq | XP_015072758.2 | uncharacterized protein LOC107016977 [Solanum pennellii] | 0 |
| G7ID19 | RNA-binding protein 2 OS=Medicago truncatula OX=3880 GN=RBP2 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology