Basic Information
Locus ID:
gene-LOC107016960
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
PAN-like domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 6536814 | 6540242 | + | gene-LOC107016960 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.59 | 55,303.67 Da | 48.55 | 89.88 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01098 | PAN_AP_plant | 43 | 130 | 9.74082E-13 | - |
| Pfam | PF08276 | PAN-like domain | 56 | 115 | 2.0E-11 | IPR003609 |
| Pfam | PF00069 | Protein kinase domain | 218 | 414 | 1.4E-44 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 198 | 465 | 3.46E-73 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 291 | 471 | 4.2E-48 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 182 | 290 | 2.6E-35 | - |
| SMART | SM00220 | serkin_6 | 215 | 463 | 6.7E-28 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 215 | 488 | 35.085548 | IPR000719 |
| ProSiteProfiles | PS50948 | PAN/Apple domain profile. | 47 | 130 | 7.791877 | IPR003609 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 336 | 348 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 221 | 244 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G27290.2 | - | 0 |
| RefSeq | XP_015072750.1 | putative receptor-like protein kinase At4g00960 [Solanum pennellii] | 0 |
| Q9LPZ9 | G-type lectin S-receptor-like serine/threonine-protein kinase SD1-13 OS=Arabidopsis thaliana OX=3702 GN=SD113 PE=1 SV=2 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Asteraceae | Flaveria trinervia | 1 | Ftri5G28475 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132621388 |
| Solanaceae | Solanum chilense | 1 | SOLCI002696000 |
| Solanaceae | Solanum pennellii | 5 | gene-LOC107010092, gene-LOC107010094, gene-LOC107016926 ... |