Basic Information
Locus ID:
gene-LOC107016564
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
AMSH-like ubiquitin
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 19813499 | 19842529 | - | gene-LOC107016564 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.30 | 18,583.99 Da | 56.54 | 81.03 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01398 | JAB1/Mov34/MPN/PAD-1 ubiquitin protease | 2 | 98 | 3.8E-15 | IPR000555 |
| SUPERFAMILY | SSF102712 | JAB1/MPN domain | 5 | 122 | 1.96E-17 | - |
| Gene3D | G3DSA:3.40.140.10 | Cytidine Deaminase, domain 2 | 1 | 165 | 2.1E-54 | - |
| SMART | SM00232 | pad1_6 | 1 | 121 | 1.8E-4 | IPR000555 |
| ProSiteProfiles | PS50249 | MPN domain profile. | 1 | 122 | 25.818708 | IPR037518 |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G10600.1 | associated molecule with the SH3 domain of STAM 2. | 0 |
| RefSeq | XP_015072483.1 | LOW QUALITY PROTEIN: AMSH-like ubiquitin thioesterase 2 [Solanum pennellii] | 0 |
| Q6NKP9 | AMSH-like ubiquitin thioesterase 2 OS=Arabidopsis thaliana OX=3702 GN=AMSH2 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology