Basic Information
Locus ID:
gene-LOC107016450
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
Rhamnogalacturonate lyase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 4886435 | 4891435 | - | gene-LOC107016450 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.02 | 78,629.61 Da | 32.41 | 72.75 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10320 | RGL4_N | 67 | 347 | 1.41751E-63 | - |
| CDD | cd10316 | RGL4_M | 384 | 483 | 4.23054E-34 | IPR029413 |
| CDD | cd10317 | RGL4_C | 495 | 683 | 6.97873E-50 | - |
| Pfam | PF14686 | Polysaccharide lyase family 4, domain II | 407 | 480 | 7.3E-24 | IPR029413 |
| Pfam | PF14683 | Polysaccharide lyase family 4, domain III | 493 | 682 | 4.7E-50 | IPR029411 |
| Pfam | PF06045 | Rhamnogalacturonate lyase family | 62 | 254 | 2.5E-65 | IPR010325 |
| SUPERFAMILY | SSF49785 | Galactose-binding domain-like | 490 | 683 | 1.36E-43 | IPR008979 |
| SUPERFAMILY | SSF49452 | Starch-binding domain-like | 380 | 481 | 9.02E-9 | IPR013784 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 68 | 350 | 2.29E-13 | IPR011013 |
| Gene3D | G3DSA:2.70.98.10 | - | 62 | 328 | 4.0E-14 | IPR014718 |
| Gene3D | G3DSA:2.60.120.260 | - | 491 | 683 | 5.0E-15 | - |
| Gene3D | G3DSA:2.60.40.1120 | - | 381 | 480 | 2.3E-8 | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G09890.4 | - | 0 |
| RefSeq | XP_027772542.1 | uncharacterized protein LOC107016450 [Solanum pennellii] | 0 |
| A1D144 | Probable rhamnogalacturonate lyase B OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=rglB PE=3 SV=1 | 0 | |
| TrEMBL | A0A1U7XRJ2 | rhamnogalacturonan endolyase OS=Nicotiana sylvestris OX=4096 GN=LOC104236785 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology