Basic Information
Locus ID:
gene-LOC107016390
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 314313 | 316840 | - | gene-LOC107016390 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.20 | 81,328.47 Da | 38.05 | 103.57 | 0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 36 | 73 | 3.7E-12 | IPR013210 |
| Pfam | PF00560 | Leucine Rich Repeat | 275 | 297 | 1.0 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 447 | 643 | 6.1E-42 | IPR000719 |
| Pfam | PF13855 | Leucine rich repeat | 179 | 236 | 3.2E-7 | IPR001611 |
| SUPERFAMILY | SSF52058 | L domain-like | 34 | 312 | 2.86E-54 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 429 | 722 | 7.96E-67 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 519 | 726 | 5.4E-53 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 34 | 324 | 1.9E-70 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 409 | 518 | 3.6E-25 | - |
| SMART | SM00220 | serkin_6 | 443 | 731 | 7.5E-33 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 443 | 715 | 37.629669 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 563 | 575 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 449 | 471 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 342 | 367 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G69270.1 | receptor-like protein kinase 1. RPK1 is a leucine-rich receptor-like kinase located in the plasma membrane which is upregulated by abscisic acid, dehydration, high salt, low temperature, but not by other plant hormones. RPK1 knock-out and antisense plants show an ABA-insensitive phenotype. RPK1 plays a role in ABA-controlled cell proliferation and is a regulator of the ABA signal transduction pathway. Overexpression of the LRR domain has a dominant negative effect on RPK1. | 0 |
| RefSeq | XP_015072357.2 | LRR receptor-like serine/threonine-protein kinase RPK2 [Solanum pennellii] | 0 |
| Q9ZRF9 | Probable LRR receptor-like serine/threonine-protein kinase RPK1 OS=Arabidopsis thaliana OX=3702 GN=RPK1 PE=1 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology