Basic Information
Locus ID:
gene-LOC107016385
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
In Between Ring fingers
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 600030 | 601649 | - | gene-LOC107016385 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.20 | 63,500.14 Da | 52.09 | 63.28 | -0.73 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 269 | 313 | 1.5E-6 | IPR002867 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 193 | 254 | 7.2E-14 | IPR002867 |
| SUPERFAMILY | SSF57850 | RING/U-box | 116 | 201 | 2.47E-12 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 193 | 263 | 1.24E-11 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 273 | 319 | 9.81E-14 | - |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 513 | 536 | 3.53E-5 | IPR036443 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 103 | 184 | 5.3E-6 | IPR013083 |
| Gene3D | G3DSA:1.20.120.1750 | - | 250 | 495 | 1.9E-68 | - |
| SMART | SM00647 | ibrneu5 | 258 | 320 | 0.13 | IPR002867 |
| SMART | SM00647 | ibrneu5 | 192 | 254 | 5.1E-20 | IPR002867 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 118 | 324 | 39.267403 | IPR044066 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 517 | 536 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 25 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 7 | 23 | - | - |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G65430.1 | IBR domain-containing protein. | 0 |
| RefSeq | XP_015072355.1 | probable E3 ubiquitin-protein ligase ARI8 [Solanum pennellii] | 0 |
| Q8W468 | Probable E3 ubiquitin-protein ligase ARI8 OS=Arabidopsis thaliana OX=3702 GN=ARI8 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Solanaceae | Lycium barbarum | 1 | gene-LOC132629189 |
| Solanaceae | Solanum chilense | 1 | SOLCI005917200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107016385 |