Basic Information
Locus ID:
gene-LOC107016360
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
Serine-threonine protein kinase, plant-type
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 5126048 | 5129776 | + | gene-LOC107016360 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.28 | 124,657.17 Da | 37.80 | 108.45 | 0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13855 | Leucine rich repeat | 677 | 736 | 2.5E-6 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 26 | 65 | 2.2E-8 | IPR013210 |
| Pfam | PF00069 | Protein kinase domain | 845 | 1115 | 7.3E-44 | IPR000719 |
| Pfam | PF00560 | Leucine Rich Repeat | 429 | 451 | 1.8 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 580 | 640 | 1.9E-6 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 166 | 186 | 0.26 | IPR001611 |
| SUPERFAMILY | SSF52047 | RNI-like | 402 | 745 | 1.02E-60 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 74 | 392 | 5.49E-52 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 822 | 1118 | 9.58E-70 | IPR011009 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 474 | 775 | 3.9E-87 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 164 | 258 | 2.1E-23 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 920 | 1125 | 6.3E-57 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 825 | 919 | 9.9E-24 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 24 | 163 | 4.8E-35 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 374 | 473 | 4.1E-21 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 259 | 373 | 8.3E-26 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 579 | 602 | 14.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 285 | 309 | 160.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 403 | 427 | 140.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 116 | 140 | 8.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 164 | 188 | 22.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 212 | 236 | 20.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 699 | 723 | 72.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 451 | 475 | 380.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 603 | 627 | 69.0 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 699 | 725 | 440.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 309 | 330 | 48.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 212 | 238 | 270.0 | - |
| SMART | SM00220 | serkin_6 | 844 | 1124 | 5.7E-26 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 675 | 698 | 43.0 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 531 | 563 | 470.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 378 | 411 | 510.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 285 | 308 | 29.0 | - |
| SMART | SM00369 | LRR_typ_2 | 531 | 555 | 280.0 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 427 | 453 | 490.0 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 844 | 1125 | 34.788734 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 850 | 872 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 963 | 975 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G47090.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_027771988.1 | LOW QUALITY PROTEIN: receptor kinase-like protein Xa21 [Solanum pennellii] | 0 |
| Q1MX30 | Receptor kinase-like protein Xa21 OS=Oryza sativa subsp. indica OX=39946 GN=XA21 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6N2B326 | Protein kinase domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_017432 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Solanaceae | Lycium barbarum | 10 | gene-LOC132613285, gene-LOC132613458, gene-LOC132613462 ... |
| Solanaceae | Solanum chilense | 1 | SOLCI004842000 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107016360, gene-LOC107024787 |