Basic Information
Locus ID:
gene-LOC107016180
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
Leucine rich repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 69627774 | 69631811 | + | gene-LOC107016180 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.89 | 118,727.04 Da | 42.73 | 107.78 | 0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13855 | Leucine rich repeat | 110 | 168 | 3.7E-9 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 792 | 1059 | 1.1E-45 | IPR000719 |
| Pfam | PF13516 | Leucine Rich repeat | 661 | 676 | 0.8 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 38 | 81 | 8.9E-10 | IPR013210 |
| Pfam | PF13855 | Leucine rich repeat | 543 | 602 | 7.4E-9 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 400 | 458 | 5.5E-8 | IPR001611 |
| SUPERFAMILY | SSF52047 | RNI-like | 285 | 678 | 1.65E-69 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 60 | 411 | 1.59E-64 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 773 | 1062 | 1.89E-72 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 771 | 867 | 1.2E-22 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 344 | 444 | 5.0E-30 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 868 | 1084 | 2.2E-55 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 239 | 343 | 1.0E-32 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 33 | 99 | 1.5E-7 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 100 | 238 | 6.8E-38 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 445 | 706 | 1.2E-78 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 180 | 204 | 130.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 277 | 301 | 78.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 349 | 373 | 210.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 589 | 613 | 59.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 132 | 156 | 35.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 421 | 445 | 120.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 790 | 1066 | 2.6E-27 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 661 | 694 | 170.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 541 | 564 | 23.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 790 | 1081 | 36.937103 | IPR000719 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 640 | 662 | 7.080498 | IPR001611 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 910 | 922 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 796 | 819 | - | IPR017441 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 638 | 651 | 5.6E-5 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 135 | 148 | 5.6E-5 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1070 | 1088 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1068 | 1088 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G34110.1 | Leucine-rich receptor-like protein kinase family protein. | 0 |
| RefSeq | XP_015072156.1 | probable LRR receptor-like serine/threonine-protein kinase At1g34110 [Solanum pennellii] | 0 |
| C0LGF5 | LRR receptor-like serine/threonine-protein kinase RGI5 OS=Arabidopsis thaliana OX=3702 GN=RGI5 PE=1 SV=2 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg22586, jg6063 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_22819 |
| Amaranthaceae | Atriplex hortensis | 3 | Ah024606, Ah024607, Ah024608 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_1g012310, BVRB_2g039850 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg39288, Sbi_jg54613 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg11138 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00015595 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000014975, gene:ENSEOMG00000035211 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.1AG0015430, CQ.Regalona.r1.1BG0010500 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30283250 |
| Apiaceae | Apium graveolens | 1 | Ag7G02166 |
| Arecaceae | Cocos nucifera | 3 | COCNU_02G000350, COCNU_02G000360, COCNU_03G015900 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103704885, gene-LOC103709763 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.2245.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri16G17080 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G34110.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10006642m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g29360.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB03g036150.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G1485 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G1622 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g19340 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-1834, nbisL1-mrna-1835 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG06.1605 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00023114 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0543790, gene-QOZ80_6BG0497170 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0715220.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_034808, gene-QYE76_034809 |
| Poaceae | Oryza coarctata | 2 | Oco11G011880, Oco12G012050 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g38990.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G176900 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0302878, Pt_Chr0400576 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr02G029450, Chr05G007150, Chr10G017210, Chr11G005280 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G608900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG051420, gene_TRIDC7BG042490 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G368200.1, TraesCS7B02G260400.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb386160_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-41122 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g30752, Zma_g32997 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc09g10990 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_7_RagTag.1262, evm.TU.Scaffold_8_RagTag.433 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-18556, nbisL1-mrna-9826 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-13443, nbisL1-mrna-2278 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-13233, nbisL1-mrna-18023 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000002l.131, add.evm.TU.utg000018l.277 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-18026 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-11196 |
| Salicaceae | Populus euphratica | 2 | populus_peu14929, populus_peu32604 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132601794, gene-LOC132627391 |
| Solanaceae | Solanum chilense | 2 | SOLCI005251400, SOLCI006465400 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107006634, gene-LOC107016180 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_15154 |
| Tamaricaceae | Tamarix chinensis | 1 | TC09G1717 |