Basic Information
Locus ID:
gene-LOC107016139
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 61432668 | 61445382 | + | gene-LOC107016139 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.14 | 62,869.63 Da | 46.07 | 86.29 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 65 | 560 | 5.6E-44 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 63 | 562 | 8.24E-67 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 60 | 566 | 3.8E-71 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 64 | 563 | 38.586895 | IPR028889 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 491 | 508 | - | IPR018200 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 65 | 80 | - | IPR018200 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G39370.1 | ubiquitin-specific protease 27. Encodes a ubiquitin-specific protease. | 0 |
| RefSeq | XP_015072113.1 | ubiquitin carboxyl-terminal hydrolase 27 [Solanum pennellii] | 0 |
| Q9FPS0 | Ubiquitin carboxyl-terminal hydrolase 27 OS=Arabidopsis thaliana OX=3702 GN=UBP27 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg16964 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_13300 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah027166 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g133440 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg58902, Sbi_jg63707 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg23185 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00010466 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl33709, Sgl39020 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000000663, gene:ENSEOMG00000000793 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0022710, CQ.Regalona.r1.6BG0024010 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30044010 |
| Apiaceae | Apium graveolens | 1 | Ag3G01235 |
| Arecaceae | Cocos nucifera | 1 | COCNU_15G001940 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103701244 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_02.744.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri17G03258 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G39370.3 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10025021m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g36490.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB03g015230.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G1852 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G1918 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g00470 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0514s00006.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g11560 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.786 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00014405 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G06102 |
| Poaceae | Echinochloa crus-galli | 2 | AH09.1002, BH09.1076 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0317650, gene-QOZ80_4BG0349050 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0168270.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_044022 |
| Poaceae | Oryza coarctata | 1 | Oco07G005840 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g34984.3 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G094700 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr23G013070, Chr24G010710, Chr25G011350 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G533400 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG043850, gene_TRIDC2BG046510 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G302200.2, TraesCS2B02G318000.2 ... |
| Poaceae | Zea mays | 2 | Zm00001eb082910_P001, Zm00001eb159190_P001 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g21279 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG07.328, evm.TU.LG15.629 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g01460 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-1073 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-19430 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-2294 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000019l.627 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-15012 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-1715 |
| Salicaceae | Populus euphratica | 2 | populus_peu23055, populus_peu23066 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132613766 |
| Solanaceae | Solanum chilense | 1 | SOLCI002675200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107016139 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_5822 |
| Tamaricaceae | Tamarix chinensis | 1 | TC02G2874 |
| Zosteraceae | Zostera marina | 1 | Zosma01g42210.v3.1 |