Basic Information
Locus ID:
gene-LOC107016123
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
A Receptor for Ubiquitination Targets
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 73163951 | 73166380 | + | gene-LOC107016123 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.42 | 42,212.95 Da | 56.21 | 85.11 | -0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 11 | 52 | 4.1E-10 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 5 | 58 | 9.16E-10 | IPR036047 |
| SUPERFAMILY | SSF117281 | Kelch motif | 78 | 344 | 1.12E-12 | IPR015915 |
| Gene3D | G3DSA:2.120.10.80 | - | 78 | 359 | 1.3E-9 | IPR015915 |
| Gene3D | G3DSA:1.20.1280.50 | - | 2 | 50 | 1.4E-6 | - |
| SMART | SM00256 | fbox_2 | 15 | 55 | 9.4E-8 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 9 | 55 | 10.610234 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G43190.1 | Galactose oxidase/kelch repeat superfamily protein. | 0 |
| RefSeq | XP_015072097.1 | F-box/kelch-repeat protein At5g43190 [Solanum pennellii] | 0 |
| Q9FHS6 | F-box/kelch-repeat protein At5g43190 OS=Arabidopsis thaliana OX=3702 GN=At5g43190 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg22712 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_6041 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_1g015140 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg39668, Sbi_jg55046 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg14639 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00013176 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl12513, Sgl17788 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000036112, gene:ENSEOMG00000046960 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.1BG0007180 |
| Apiaceae | Apium graveolens | 1 | Ag10G02809 |
| Arecaceae | Cocos nucifera | 1 | COCNU_13G007030 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103720753, gene-LOC120107549 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.1232.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri16G08060 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G43190.1 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g08010.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB04g017740.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G1287 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G1391 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate02g32320, gene.Thate02g32330 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG06.338, evm.TU.LG06.339 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG07.590, evm.TU.LG15.353 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_7_RagTag.821 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-25628 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-19251 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-6655 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000002l.251 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00010367 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-22032 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-10075 |
| Salicaceae | Populus euphratica | 1 | populus_peu32057 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132627772, gene-LOC132627773 |
| Solanaceae | Solanum chilense | 1 | SOLCI004852500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107016123 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.31059_chr11_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC04G2650 |