Basic Information
Locus ID:
gene-LOC107016034
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
Belongs to the ubiquitin-conjugating enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 88522892 | 88523905 | - | gene-LOC107016034 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.07 | 33,377.00 Da | 39.56 | 82.36 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 60 | 188 | 8.0E-19 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 49 | 185 | 3.28E-28 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 17 | 268 | 2.0E-48 | IPR016135 |
| SMART | SM00212 | ubc_7 | 59 | 207 | 2.8E-6 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 56 | 226 | 25.212948 | IPR000608 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G08690.1 | ubiquitin-conjugating enzyme 11. | 0 |
| RefSeq | XP_015071998.1 | probable ubiquitin-conjugating enzyme E2 25 [Solanum pennellii] | 0 |
| Q9NR09 | Dual E2 ubiquitin-conjugating enzyme/E3 ubiquitin-protein ligase BIRC6 OS=Homo sapiens OX=9606 GN=BIRC6 PE=1 SV=3 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg8985 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00004504 |
| Amaranthaceae | Suaeda glauca | 8 | Sgl01756, Sgl01759, Sgl06915, Sgl06917, Sgl65488, Sgl65652 ... |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000024363 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00016482 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_7_RagTag.1705 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-19818 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-6381 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000002l.22 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-22086 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-12389 |
| Salicaceae | Populus euphratica | 1 | populus_peu16603 |
| Solanaceae | Solanum chilense | 1 | SOLCI000868500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107016034 |
| Tamaricaceae | Tamarix chinensis | 1 | TC07G1743 |