Basic Information
Locus ID:
gene-LOC107015500
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
ubiquitin receptor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 71309365 | 71313957 | - | gene-LOC107015500 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.44 | 39,181.17 Da | 48.76 | 83.50 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14382 | UBA2_RAD23_plant | 318 | 360 | 6.00176E-24 | - |
| CDD | cd01805 | Ubl_Rad23 | 1 | 74 | 2.67461E-29 | - |
| CDD | cd14379 | UBA1_Rad23_plant | 136 | 185 | 3.49485E-31 | - |
| Pfam | PF00627 | UBA/TS-N domain | 142 | 180 | 4.6E-15 | IPR015940 |
| Pfam | PF00240 | Ubiquitin family | 3 | 76 | 2.1E-16 | IPR000626 |
| Pfam | PF00627 | UBA/TS-N domain | 321 | 357 | 8.6E-12 | IPR015940 |
| Pfam | PF09280 | XPC-binding domain | 241 | 296 | 2.7E-22 | IPR015360 |
| SUPERFAMILY | SSF46934 | UBA-like | 139 | 190 | 2.43E-12 | IPR009060 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 238 | 304 | 8.63E-23 | IPR036353 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 90 | 2.12E-21 | IPR029071 |
| SUPERFAMILY | SSF46934 | UBA-like | 300 | 363 | 3.12E-15 | IPR009060 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 80 | 5.2E-26 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 135 | 185 | 1.1E-21 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 313 | 361 | 1.4E-23 | - |
| Gene3D | G3DSA:1.10.10.540 | - | 231 | 297 | 1.4E-26 | IPR036353 |
| SMART | SM00165 | uba_6 | 322 | 359 | 2.3E-8 | IPR015940 |
| SMART | SM00165 | uba_6 | 142 | 182 | 1.4E-5 | IPR015940 |
| SMART | SM00213 | ubq_7 | 1 | 75 | 5.2E-21 | IPR000626 |
| SMART | SM00727 | CBM | 239 | 282 | 7.0E-5 | IPR006636 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 1 | 364 | 1.0E-128 | IPR004806 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 320 | 360 | 15.510838 | IPR015940 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 140 | 183 | 12.90835 | IPR015940 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 79 | 18.497412 | IPR000626 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 267 | 289 | 7.8E-33 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 333 | 347 | 7.8E-33 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 316 | 332 | 7.8E-33 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 348 | 363 | 7.8E-33 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 80 | 116 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 80 | 102 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G79650.2 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_015071281.1 | ubiquitin receptor RAD23b isoform X1 [Solanum pennellii] | 0 |
| Q84L33 | Ubiquitin receptor RAD23b OS=Arabidopsis thaliana OX=3702 GN=RAD23B PE=1 SV=3 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology