Basic Information
Locus ID:
gene-LOC107015414
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
Zinc finger CCCH domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 4035384 | 4043559 | + | gene-LOC107015414 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.53 | 47,340.66 Da | 30.65 | 70.25 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 139 | 175 | 4.0E-6 | IPR001680 |
| Pfam | PF18044 | CCCH-type zinc finger | 109 | 129 | 6.2E-6 | IPR041367 |
| Pfam | PF00400 | WD domain, G-beta repeat | 300 | 334 | 0.0062 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 260 | 295 | 0.0012 | IPR001680 |
| SUPERFAMILY | SSF90229 | CCCH zinc finger | 106 | 130 | 7.33E-7 | IPR036855 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 138 | 425 | 3.66E-43 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 122 | 280 | 5.1E-18 | IPR015943 |
| Gene3D | G3DSA:3.30.1370.210 | - | 11 | 67 | 1.0E-5 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 281 | 431 | 2.1E-27 | IPR015943 |
| SMART | SM00356 | c3hfinal6 | 24 | 49 | 0.48 | IPR000571 |
| SMART | SM00356 | c3hfinal6 | 107 | 131 | 1.8E-5 | IPR000571 |
| SMART | SM00320 | WD40_4 | 385 | 422 | 4.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 298 | 335 | 4.0E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 215 | 251 | 160.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 136 | 175 | 1.7E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 258 | 295 | 2.9E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 339 | 382 | 14.0 | IPR001680 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 24 | 50 | 10.276935 | IPR000571 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 265 | 298 | 9.968326 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 265 | 304 | 12.580379 | IPR001680 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 105 | 132 | 14.548975 | IPR000571 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 143 | 175 | 11.101955 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 143 | 184 | 13.917108 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 282 | 296 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 162 | 176 | 1.1E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 322 | 336 | 1.1E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 282 | 296 | 1.1E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 25 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 11 | 25 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 56 | 71 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 52 | 92 | - | - |
| Coils | Coil | Coil | 430 | 431 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G25440.1 | zinc finger WD40 repeat protein 1. | 0 |
| RefSeq | XP_015071162.1 | zinc finger CCCH domain-containing protein 48 [Solanum pennellii] | 0 |
| Q9FNZ2 | Zinc finger CCCH domain-containing protein 48 OS=Arabidopsis thaliana OX=3702 GN=ZFWD1 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology