Basic Information
Locus ID:
gene-LOC107015308
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Short Name:
CPK30
Description:
Lipopolysaccharide kinase (Kdo/WaaP) family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 67859192 | 67864668 | + | gene-LOC107015308 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.43 | 60,922.33 Da | 36.81 | 85.89 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05117 | STKc_CAMK | 55 | 313 | 2.32807E-138 | - |
| Pfam | PF13499 | EF-hand domain pair | 360 | 421 | 9.3E-12 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 432 | 495 | 7.6E-14 | IPR002048 |
| Pfam | PF00069 | Protein kinase domain | 58 | 314 | 2.7E-75 | IPR000719 |
| SUPERFAMILY | SSF47473 | EF-hand | 342 | 521 | 1.19E-46 | IPR011992 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 38 | 334 | 1.24E-86 | IPR011009 |
| Gene3D | G3DSA:1.10.238.10 | - | 323 | 498 | 6.7E-54 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 57 | 141 | 2.5E-28 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 142 | 322 | 2.5E-60 | - |
| SMART | SM00220 | serkin_6 | 56 | 314 | 6.2E-97 | IPR000719 |
| SMART | SM00054 | efh_1 | 361 | 389 | 1.7E-7 | IPR002048 |
| SMART | SM00054 | efh_1 | 433 | 461 | 4.7E-5 | IPR002048 |
| SMART | SM00054 | efh_1 | 397 | 425 | 0.0045 | IPR002048 |
| SMART | SM00054 | efh_1 | 469 | 497 | 2.4E-7 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 357 | 392 | 16.940306 | IPR002048 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 56 | 314 | 49.389156 | IPR000719 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 393 | 428 | 11.305434 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 465 | 500 | 13.983393 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 429 | 464 | 14.597092 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 370 | 382 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 406 | 418 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 442 | 454 | - | IPR018247 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 62 | 85 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 176 | 188 | - | IPR008271 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 478 | 490 | - | IPR018247 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 39 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 14 | 30 | - | - |
| Coils | Coil | Coil | 379 | 399 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G18890.1 | calcium-dependent protein kinase 1. encodes a calcium-dependent protein kinase whose gene expression is induced by dehydration and high salt. Kinase activity could not be detected in vitro. | 0 |
| RefSeq | XP_015071018.1 | calcium-dependent protein kinase 10 [Solanum pennellii] | 0 |
| Q9M9V8 | Calcium-dependent protein kinase 10 OS=Arabidopsis thaliana OX=3702 GN=CPK10 PE=1 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology