Basic Information
Locus ID:
gene-LOC107015184
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
USP8 dimerisation domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 72540436 | 72548045 | - | gene-LOC107015184 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.51 | 57,833.51 Da | 57.60 | 89.36 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08066 | MPN_AMSH_like | 341 | 516 | 1.32066E-111 | IPR044098 |
| Pfam | PF01398 | JAB1/Mov34/MPN/PAD-1 ubiquitin protease | 340 | 445 | 2.0E-18 | IPR000555 |
| Pfam | PF08969 | USP8 dimerisation domain | 13 | 102 | 4.9E-13 | IPR015063 |
| SUPERFAMILY | SSF102712 | JAB1/MPN domain | 341 | 473 | 7.98E-21 | - |
| Gene3D | G3DSA:1.20.58.80 | - | 4 | 129 | 1.5E-28 | - |
| Gene3D | G3DSA:3.40.140.10 | Cytidine Deaminase, domain 2 | 336 | 516 | 7.6E-72 | - |
| SMART | SM00232 | pad1_6 | 341 | 469 | 3.7E-19 | IPR000555 |
| ProSiteProfiles | PS50249 | MPN domain profile. | 342 | 472 | 32.035797 | IPR037518 |
| Coils | Coil | Coil | 93 | 113 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48790.1 | associated molecule with the SH3 domain of STAM 1. | 0 |
| RefSeq | XP_015070862.1 | AMSH-like ubiquitin thioesterase 1 [Solanum pennellii] | 0 |
| Q8VYB5 | AMSH-like ubiquitin thioesterase 1 OS=Arabidopsis thaliana OX=3702 GN=AMSH1 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology