Basic Information
Locus ID:
gene-LOC107015044
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
Hemerythrin HHE cation binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 72512835 | 72525820 | + | gene-LOC107015044 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.81 | 139,981.91 Da | 54.55 | 76.55 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16464 | RING-H2_Pirh2 | 1118 | 1161 | 3.51493E-16 | - |
| CDD | cd12108 | Hr-like | 308 | 437 | 1.39255E-17 | - |
| CDD | cd12108 | Hr-like | 49 | 174 | 2.02362E-31 | - |
| CDD | cd12108 | Hr-like | 647 | 806 | 2.14876E-27 | - |
| Pfam | PF13639 | Ring finger domain | 1118 | 1160 | 4.7E-7 | IPR001841 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 644 | 807 | 9.4E-9 | IPR012312 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 52 | 176 | 2.1E-11 | IPR012312 |
| Pfam | PF05495 | CHY zinc finger | 990 | 1065 | 5.9E-18 | IPR008913 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 306 | 439 | 3.8E-7 | IPR012312 |
| Pfam | PF14599 | Zinc-ribbon | 1166 | 1223 | 1.3E-23 | IPR039512 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 984 | 1046 | 4.05E-16 | IPR037274 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1116 | 1173 | 3.18E-9 | - |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 1056 | 1112 | 3.14E-15 | IPR037275 |
| Gene3D | G3DSA:2.20.28.10 | - | 1189 | 1229 | 2.9E-17 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 308 | 455 | 2.1E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1112 | 1163 | 2.3E-10 | IPR013083 |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 640 | 869 | 4.3E-27 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 44 | 194 | 3.6E-33 | - |
| SMART | SM00184 | ring_2 | 1119 | 1160 | 1.6E-6 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 983 | 1052 | 24.437046 | IPR008913 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 1055 | 1118 | 29.338161 | IPR017921 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 1119 | 1161 | 11.51558 | IPR001841 |
| Coils | Coil | Coil | 314 | 334 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G18290.1 | zinc finger protein-related. Encodes BRUTUS (BTS), a putative E3 ligase protein with metal ion binding and DNA binding domains, which negatively regulates the response to iron deficiency. | 0 |
| RefSeq | XP_015070690.1 | zinc finger protein BRUTUS-like [Solanum pennellii] | 0 |
| Q8LPQ5 | Zinc finger protein BRUTUS OS=Arabidopsis thaliana OX=3702 GN=BTS PE=1 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology