Basic Information
Locus ID:
gene-LOC107014911
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
SNF2 family N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 1182258 | 1194536 | - | gene-LOC107014911 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.75 | 145,036.23 Da | 50.39 | 77.90 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18008 | DEXDc_SHPRH-like | 576 | 898 | 3.88903E-84 | - |
| CDD | cd18793 | SF2_C_SNF | 1161 | 1269 | 1.91271E-51 | - |
| Pfam | PF00176 | SNF2 family N-terminal domain | 594 | 975 | 2.9E-65 | IPR000330 |
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 1014 | 1051 | 1.4E-7 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 1159 | 1259 | 5.3E-15 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 560 | 898 | 5.84E-45 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 907 | 1316 | 2.66E-54 | IPR027417 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1011 | 1063 | 1.81E-12 | - |
| Gene3D | G3DSA:3.40.50.10810 | - | 669 | 754 | 5.5E-11 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 548 | 641 | 2.1E-10 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 772 | 899 | 5.5E-28 | IPR038718 |
| Gene3D | G3DSA:3.40.50.300 | - | 913 | 1317 | 2.3E-63 | IPR027417 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 999 | 1065 | 1.0E-11 | IPR013083 |
| SMART | SM00490 | helicmild6 | 1176 | 1259 | 2.4E-18 | IPR001650 |
| SMART | SM00487 | ultradead3 | 572 | 875 | 2.3E-27 | IPR014001 |
| SMART | SM00184 | ring_2 | 1014 | 1052 | 6.9E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 1014 | 1051 | 10.910707 | IPR001841 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 591 | 860 | 12.854284 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 1153 | 1312 | 14.681666 | IPR001650 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 1029 | 1038 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1129 | 1157 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 747 | 788 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 81 | 106 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 749 | 771 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 41 | 65 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G61140.3 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_015070516.1 | helicase-like transcription factor CHR28 isoform X1 [Solanum pennellii] | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology