Basic Information
Locus ID:
gene-LOC107014790
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 27748032 | 27751409 | + | gene-LOC107014790 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.04 | 121,535.67 Da | 38.11 | 100.08 | 0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 852 | 1120 | 1.11664E-87 | - |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 37 | 76 | 6.0E-12 | IPR013210 |
| Pfam | PF00560 | Leucine Rich Repeat | 303 | 324 | 0.91 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 634 | 692 | 1.4E-7 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 181 | 203 | 0.28 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 849 | 1047 | 8.6E-43 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 826 | 1117 | 3.1E-73 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 354 | 745 | 9.07E-41 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 36 | 334 | 1.81E-55 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 922 | 1122 | 1.3E-56 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 809 | 921 | 7.2E-27 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 228 | 347 | 2.4E-30 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 348 | 472 | 6.4E-21 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 497 | 751 | 1.8E-51 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 35 | 225 | 8.0E-45 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 607 | 631 | 39.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 227 | 251 | 260.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 655 | 678 | 220.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 846 | 1124 | 3.6E-32 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 179 | 203 | 9.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 300 | 324 | 4.7 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 679 | 702 | 110.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 155 | 178 | 31.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 846 | 1120 | 38.929996 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 852 | 874 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 966 | 978 | - | IPR008271 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 417 | 430 | 6.7E-5 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 655 | 668 | 6.7E-5 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 752 | 774 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G02130.1 | receptor-like protein kinase 2. | 0 |
| RefSeq | NP_001310364.1 | LRR receptor-like serine/threonine-protein kinase RPK2 [Solanum pennellii] | 0 |
| Q9S7I6 | LRR receptor-like serine/threonine-protein kinase RPK2 OS=Arabidopsis thaliana OX=3702 GN=RPK2 PE=1 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology